PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28291_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 406aa    MW: 45585.5 Da    PI: 8.7076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28291_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-112450127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C++f++t  Ck+G +CkF+H++
  Neem_28291_f_1 24 PGEPDCPYFLKTKKCKFGLKCKFNHPK 50
                    5789*********************96 PP

2zf-CCCH37.15.4e-127397327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C f++++G+Ck+G++CkF+H++
  Neem_28291_f_1 73 EPPCAFYLKNGICKFGATCKFHHPK 97
                    79*********************96 PP

3zf-CCCH38.71.6e-12151176126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+++H+
  Neem_28291_f_1 151 PGEVDCPFYLKTGSCKYGSTCRYNHP 176
                     57899********************9 PP

4zf-CCCH41.62.1e-13239260526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+++++tG CkyG+rCkF+H+
  Neem_28291_f_1 239 ECDYYMKTGVCKYGERCKFHHP 260
                     7********************9 PP

5zf-CCCH35.51.7e-11360380626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+++++tG CkyG++CkF H+
  Neem_28291_f_1 360 CPYYMKTGSCKYGSTCKFDHP 380
                     ********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7372351IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-42350IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-92550IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-52853IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-42950IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5727098IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-67097IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-97397IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-67397IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-47596IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676150178IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7150177IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10152176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5154177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4156175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037234262IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-7234261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7235262IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10239260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-6240260IPR000571Zinc finger, CCCH-type
SMARTSM003560.012357381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6358381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455359382IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9360380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5360379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLYRPILILL RVPLIASEWL PERPGEPDCP YFLKTKKCKF GLKCKFNHPK DKLIALSDSG  60
NADVSTLPER PSEPPCAFYL KNGICKFGAT CKFHHPKDIQ ISSGGQENGS SKQNELLFKT  120
EETTGLLNSV MPHVPYIPAM LHNSKGLPIR PGEVDCPFYL KTGSCKYGST CRYNHPDRNA  180
INPPASAIGH HFITSHAASL SLGIVNPAAS MYQTIDPRLA QSALGVSPTF YPQRPGQMEC  240
DYYMKTGVCK YGERCKFHHP LDLSTAKQAS QETVKLTLAG LPRRELCMNS FYVHLSYFHK  300
EVKNSTQMNS HLGIFRFRHL VSRLYVIYIC VLIYMGGTWE WKHRRYFLSL TLHVEGALHC  360
PYYMKTGSCK YGSTCKFDHP TPGEVLAKTG SQGTSTEGDE KEAETD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493723.11e-160PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-108C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A067F2C41e-158A0A067F2C4_CITSI; Uncharacterized protein
STRINGPOPTR_0010s18390.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-95floral homeotic protein (HUA1)